rs48966256 SNP Detail

Summary

• ID
  rs48966256
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:171043405 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTCT GCCCCTCAAA CTCCTGCTTT
  Y
  CCTCCCATAC TGCTTTTCAA CACAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss119997988	PARCsnp_1.01262	PARC_SEQ	INBRED	f	SNP		C	T
ss146157102	ENSMUSSNP1926215	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss320117255	CHEV_1_173145967	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs48966256					SNP	T	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171043405 () rs orientation: forward

Symbol	Name	Function Class
Nr1i3	nuclear receptor subfamily 1, group I, member 3	within coordinates
Rr423243	regulatory region 423243	1805 bp distal
Tomm40l	translocase of outer mitochondrial membrane 40-like	174 bp downstream
Tssr9983	transcription start site region 9983	1829 bp downstream
Tssr9984	transcription start site region 9984	1791 bp downstream