rs48967989 SNP Detail

Summary

• ID
  rs48967989
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:180123312 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGGACAAAC AGGTTGGCTA GGGGACAGCC AGGACCTGTC
  AGAAAAGAGG TGAGAGGAGA GGGGACAGGG TGAGAGGAAG GGGCTAGCAG GGGTGAGTGG
  S
  AATGGGTGAG CAGGAAGGGT GTGGAGAGGC ATGCAGGGTC TGAGCAACCG CTGAGAGGAG
  CTCTGAAGCA GCGCAGTGCA AGCTCCCCCC CACCCCCAC                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148392684	ENSMUSSNP2945382	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G
ss320632270	CHEV_2_180216224	CHEVERUD	SCREENING_POP	f	SNP				C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48967989					SNP	G	G	G	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:180123312 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12896	CpG island 12896	950 bp proximal