rs48969405 SNP Detail

Summary

• ID
  rs48969405
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135692320 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTAGT TATAGAAAGC ATCAGTGAAC
  T
  AGAAGGAAGC AGTAGAGATG GGCTC                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss145545465	ENSMUSSNP2516433	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss319993117	CHEV_1_137661159	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs48969405					SNP	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135692320 () rs orientation: forward

Symbol	Name	Function Class
Cpgi797	CpG island 797	957 bp proximal
Gm70736	predicted gene, 70736	within coordinates
Phlda3	pleckstrin homology like domain, family A, member 3	1537 bp upstream
Rr372092	regulatory region 372092	689 bp upstream
Rr419268	regulatory region 419268	355 bp distal
Rr419269	regulatory region 419269	1047 bp proximal
Tssr223	transcription start site region 223	1488 bp upstream
Tssr224	transcription start site region 224	1607 bp upstream
Tssr8974	transcription start site region 8974	1503 bp upstream
Tssr8975	transcription start site region 8975	1625 bp upstream
Tssr8976	transcription start site region 8976	1636 bp upstream
Tssr8977	transcription start site region 8977	1655 bp upstream
Tssr8978	transcription start site region 8978	1659 bp upstream