rs48969838 SNP Detail

Summary

• ID
  rs48969838
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:16455546 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACAGGCAGT GGGAGGAATG
  GGTAAGCAGT TTTGGAGGAG GAGAGTTGTC TGAGGGGCCC AGGTGGTCAG GACTCACTTC
  CTGATCGAGT GGTTGTTCCC AGGTGCAAAA GGGGGAGAGA AATGCAGAAC TTCAGAAATA
  GGGCAAATGG CAGCCATTCA GGCTATGGAG ACCCAATAAA GTAAAAATGC TGGGACTAAA
  R
  TTGAGTTTGG GAGGGAGGCA GAAGAAGATG AAATCCATTC ATGACTTTTC TTAATATTGG
  AAGGTCTTCG ACCATTATTT ATAACATAAG AATTTCTGAA TGCATTATTA CAAAAAAAAA
  AAAAAAAAAA AAAACCTTAA AGAATGAATG GGTTTAGAGA CAGTTGGGGT GGGGGAGGGA
  AAAGAAGAAG GGACAGACCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss148394907	ENSMUSSNP3442443	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs48969838					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:16455546 () rs orientation: forward

Symbol	Name	Function Class
Ceacam9	CEA cell adhesion molecule 9	308 bp upstream
Gm5586	predicted gene 5586	1711 bp upstream
Tssr64618	transcription start site region 64618	333 bp upstream
Tssr70767	transcription start site region 70767	1681 bp upstream