rs48970314 SNP Detail

Summary

• ID
  rs48970314
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:81341659 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGCTGCAA TAAAGCCAGT
  GTCAAATTCC CATAGCAGAG GTCACCAGAG TTGAATGTGA GTGACATTTG ACCTGGCATC
  AAGCATGGAT TGTTGAAGGG GCTGAGACAA AAGTCTCCCC CAGAATCTTA TCTGCCCAGC
  ATTGTAGATC ATTGCCTGAT TCCCAGTGGG TGTTTCATGC TCACCAGTTT TGGATCTCAG
  S
  TCTCCTAAGT TGGCAGGAAA CTCAGTTCTG TTGGTTTAGG GCCCTGGGCA CTGTCCTCTG
  CCCCAGCAGC CACAAGATGT GAGAGAGCTT GGCTCCAAGA TGGCCGGTGC TGCCTCCTCC
  TGCCCTCCAC AGTTAGGTAG AGCAGCTTCC CCCAGTGCTA AACCTGCCTC GGTCAACCGA
  CTGTGATGGA TGTGACCCAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61292368	NES16908589	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48970314					SNP	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61292368	NES16908589	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:81341659 () rs orientation: forward

Symbol	Name	Function Class
Gm16106	predicted gene 16106	1059 bp downstream
Gm56270	predicted gene, 56270	1107 bp downstream
Gna15	guanine nucleotide binding protein, alpha 15	within coordinates
Rr223625	regulatory region 223625	554 bp distal