rs48970405 SNP Detail

Summary

• ID
  rs48970405
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30093689 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CACTGCAAGA GGCTTTTATT CTTTAGACAA AGAAGAGTAA
  GTCTTAGAGC AGAGACAGAG CAGAGGGTAG CTGAAGACTG GGGACTGCGT GATAAAAACA
  Y
  GTGGAGAGAA TTTAGCAGAT CCCTGATGCC TGGTTCTGAG TTGATTAAAA ATTGTCTCTG
  GTAAAGGAGG ATTTATGTTC TGCCTTGAGG CAGACAGAT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60991165	NES16138915	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	C	C	T	C	C	T	T		C	T	T	C		T
ss148676570	ENSMUSSNP3722069	ENSEMBL	ENSEMBL_Sanger	f	SNP		C						C
ss322133920	CHEV_7_31179283	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs48970405					SNP	T	C	T	C	C	T	C	C	T	T	T	C	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60991165	NES16138915	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30093689 () rs orientation: forward

Symbol	Name	Function Class
Gm42376	predicted gene, 42376	within coordinates
Rr155978	regulatory region 155978	1889 bp distal
Rr155979	regulatory region 155979	712 bp proximal
Tssr2182	transcription start site region 2182	106 bp downstream
Tssr2183	transcription start site region 2183	562 bp upstream
Tssr71732	transcription start site region 71732	44 bp downstream
Tssr71733	transcription start site region 71733	166 bp downstream
Tssr71734	transcription start site region 71734	258 bp downstream
Tssr71735	transcription start site region 71735	300 bp downstream