rs48971173 SNP Detail

Summary

• ID
  rs48971173
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:56500029 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAACCCACAG CGAATGACTC
  AGAGAACCAC CACTTACAGC CCAGGGCAAG ACCACAAGGG CATAGGGTGG GGTTTGTAGC
  CTATGGTATC AGAGTCCCAG AAACCCAAGC TCCCAGTGGT GGAGCATCAG TGTTTTGGAT
  GCTGAGTCCA TCAGGACAGA TGTGCATTTG GGCTCATCTC TTGTACCAGG ACCAAGCATG
  R
  CCATCTAGTG AGGGTAATCA GGAGCATCCA TTAGCAACGT ACAGTCTGGG AAGAACAATG
  GAAGAGTGAT GGACAAGGCA GTAACAGACA GGCCCACCAA GCACCCATCA GCCTATTTAG
  CACCATAGCC CCAAATGTTC CACGTGGCAA AACCCATTCT TATGAAAAGC CCACATCTGA
  CCTTTACTGA CAAAAAATAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52723303	NES15569353	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48971173					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52723303	NES15569353	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:56500029 () rs orientation: forward

Symbol	Name	Function Class
Gzmb	granzyme B	312 bp upstream
Rr295614	regulatory region 295614	11 bp distal
Tssr128924	transcription start site region 128924	385 bp upstream
Tssr128925	transcription start site region 128925	344 bp upstream
Tssr128926	transcription start site region 128926	324 bp upstream