rs48971451 SNP Detail

Summary

• ID
  rs48971451
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164174378 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTTCAAATA GAAGCTCTGT GCATGAGGAC TGTTCTGAGA
  ACACAAGCTC AGGGCAGTGT CTGTGACTGA TTTCAGTGAT GCTGTGTTGG AAGAGCTACC
  R
  TGCTAGGGAA TGAAGGCCTG ATCAAGTCCT GAAGACTTCT GCAGCCTGCA GTCTCTTCCC
  CACTCTGAAC TGAGATATGT TCAGGAAGCA GAGAAGTCA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148223022	ENSMUSSNP4845440	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48971451					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164174378 () rs orientation: forward

Symbol	Name	Function Class
Svs5	seminal vesicle secretory protein 5	307 bp upstream
Tssr744	transcription start site region 744	871 bp upstream
Tssr745	transcription start site region 745	914 bp upstream
Tssr746	transcription start site region 746	925 bp upstream
Tssr747	transcription start site region 747	938 bp downstream
Tssr748	transcription start site region 748	959 bp upstream
Tssr749	transcription start site region 749	991 bp upstream
Tssr750	transcription start site region 750	1004 bp upstream
Tssr751	transcription start site region 751	1058 bp upstream
Tssr752	transcription start site region 752	1127 bp upstream
Tssr753	transcription start site region 753	1134 bp upstream
Tssr754	transcription start site region 754	1806 bp upstream
Tssr21562	transcription start site region 21562	265 bp upstream
Tssr21563	transcription start site region 21563	282 bp upstream
Tssr21564	transcription start site region 21564	301 bp upstream
Tssr21565	transcription start site region 21565	326 bp upstream
Tssr21566	transcription start site region 21566	336 bp upstream
Tssr21567	transcription start site region 21567	350 bp upstream
Tssr21568	transcription start site region 21568	360 bp upstream
Tssr21569	transcription start site region 21569	837 bp upstream
Tssr21570	transcription start site region 21570	899 bp upstream
Tssr21571	transcription start site region 21571	930 bp upstream
Tssr21572	transcription start site region 21572	947 bp upstream
Tssr21573	transcription start site region 21573	976 bp upstream
Tssr21574	transcription start site region 21574	1040 bp upstream
Tssr21575	transcription start site region 21575	1818 bp upstream
Tssr21576	transcription start site region 21576	1834 bp upstream
Tssr21577	transcription start site region 21577	1853 bp upstream
Tssr27433	transcription start site region 27433	895 bp downstream
Tssr27434	transcription start site region 27434	918 bp downstream
Tssr27435	transcription start site region 27435	946 bp downstream
Tssr27436	transcription start site region 27436	965 bp downstream
Tssr27437	transcription start site region 27437	986 bp downstream
Tssr27438	transcription start site region 27438	1016 bp downstream
Tssr27439	transcription start site region 27439	1030 bp downstream
Tssr27440	transcription start site region 27440	1040 bp downstream
Tssr27441	transcription start site region 27441	1095 bp downstream
Tssr27442	transcription start site region 27442	1103 bp downstream
Tssr27443	transcription start site region 27443	1166 bp downstream
Tssr27444	transcription start site region 27444	1175 bp downstream
Tssr27445	transcription start site region 27445	1791 bp downstream
Tssr27446	transcription start site region 27446	1835 bp downstream
Tssr27447	transcription start site region 27447	1930 bp downstream