rs48972599 SNP Detail

Summary

• ID
  rs48972599
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:46654304 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATGCT ATGATGATAA TGGACTGAAC
  Y
  TCTGACTAAT ACCCAACCCC AACTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss148973536	ENSMUSSNP2322659	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs48972599					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:46654304 () rs orientation: forward

Symbol	Name	Function Class
Cap2	cyclase associated actin cytoskeleton regulatory protein 2	1075 bp upstream
Cpgi5539	CpG island 5539	955 bp proximal
Gm35110	predicted gene, 35110	within coordinates
Rr478915	regulatory region 478915	849 bp proximal
Rr478916	regulatory region 478916	1031 bp proximal
Rr478917	regulatory region 478917	1132 bp proximal
Rr478918	regulatory region 478918	1577 bp proximal
Tssr119597	transcription start site region 119597	1031 bp upstream
Tssr119598	transcription start site region 119598	1070 bp upstream
Tssr119599	transcription start site region 119599	1209 bp upstream
Tssr119600	transcription start site region 119600	1221 bp upstream
Tssr119601	transcription start site region 119601	1285 bp upstream
Tssr119602	transcription start site region 119602	1313 bp upstream
Tssr122343	transcription start site region 122343	1959 bp downstream