rs48973581 SNP Detail

Summary

• ID
  rs48973581
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:110767618 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGACCAAAGG TGTGCGCCAC CACAAAGCTT CCTTTTAAAA
  TTATTTTCAC ATTCACTTCT GTTTTGTGTG TATGCATGCA CATGTAAAGG TGTATGTCAC
  C
  GGTCAACACA AAGTGTCTCT TCTCGATTAT TCTGTACTGA CTTTTAGAAG ACTTATGTGT
  GGGGCTGAAG AGATGGCTCA GTGGTTAAGA GCACAGACT                       
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136960275	ENSMUSSNP5415395	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48973581					SNP	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:110767618 () rs orientation: forward

Symbol	Name	Function Class
Cripto	cripto, EGF-CFC family member	1058 bp downstream
Rr192786	regulatory region 192786	818 bp distal
Rr192787	regulatory region 192787	within coordinates
Rr202610	regulatory region 202610	851 bp distal
Rr207413	regulatory region 207413	618 bp distal