rs48974142 SNP Detail

Summary

• ID
  rs48974142
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:42403177 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGAAGTAT TTTGGTAGGC
  TGCATTTTTT CCCCCAAACA TTGCTTATAT GCACACTGGA ATGTTTTTAA ATGATTTATT
  TATTTTTATT TTAAGTCCAT GGGTGTTTTG CCTACAAGTA TGTATGCATG AGGGTGCTGG
  ATCCTCTTAG AACTGGAGTT ACACACAGTT GTGAGCTGCA TGTGTGTGCT AGGAGTTAAA
  M
  CGGGGTCCTG GAAGAGCATC CAGTGTTCCT GACCACCGAG TCATCTCTCC AGCTCCTGGA
  ATGTTTAATA AATGTTGCTG ATTATATACT TTCCCCCCCC CCAGCAACTG CTTTATCAAG
  AGATAAATTG TGTGCTTTAC AGTTAGTGAT ATAATTCACC TAAGATGTTC AGAATTACAC
  AGCCCATAAC CACAGTGTAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss147079688	ENSMUSSNP7038630	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs48974142					SNP	A	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:42403177 () rs orientation: forward

Symbol	Name	Function Class
Rr219442	regulatory region 219442	224 bp proximal
Rr227589	regulatory region 227589	578 bp distal
Snx3	sorting nexin 3	within coordinates