rs48975252 SNP Detail

Summary

• ID
  rs48975252
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:54867421 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGCATTTTC TCTTCTCTAT
  TGGGGTTTCC CCCTTTCAAA TGATTATCTT GTGTCAAGTT GACGTAAACT AGCCATCACA
  CATTGAGTAA TAATTCTGGC ATCACAAGTA CATGGTTGTG GGTAGACAAG CCCCGAATCT
  TACTAGAATT GACTATACAT CCTTAAATGA TCCTGTTTCA GTCTTGTTAC ACTCAATAGT
  R
  ACATGAGTAG AGAAGTGAAT CCATATATTA CCTTGCCATA TCTCCAGCTT ATGCCCAGAG
  GCTAGCCAGT TACCCCTGTA GGGATCAGGA CTGGTCTGGA TGGTTATACC AAGATCTCTC
  ACTTGGACAT CAGTGGCCCT GGACTGATTT TCTTTCTCCA TAGGCACCTG CCTCTGTAAA
  GTCCAGTTCT TCACACTAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61403645	NES16782415	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48975252					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61403645	NES16782415	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:54867421 () rs orientation: forward

Symbol	Name	Function Class
Rr204186	regulatory region 204186	374 bp proximal
Rr209620	regulatory region 209620	780 bp proximal