rs48975800 SNP Detail

Summary

• ID
  rs48975800
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:60551277 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTTACGTA ATCAAAATGT
  ATGCCCCCCC CCCCCACCTC TTGGGGAACG TGTTATAGTA ATTCCTGATT GCATGCCTTA
  GTTATTAGCA TTATTTACCT TTCTGCATAC CACAGTAGAA GCAAATTCAG ATGCAAGGAT
  TCAAAGCAGA AGAGGGGTTT AACCCTTAAG AACTAGACAC AAAGTCAATG GCTCTTTAGG
  R
  GCCTGAAGAT GGGTTTGAAA CCTCAGATGA AAAATCCCTG ACATCACACG ATGCCCCAGT
  CAGCACATCT AGCTGTAAGT TTGCTTTAAC GTATGGTGTC TGGGGAAAAT ACTGAGACAT
  CGCAAAAATA TCATTATATT TCAAATTTAA ACTTTTGAGA CTGCACTTCA TGCTGCGAAC
  ACTAGAGGGC AGAAGTCAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss146651370	ENSMUSSNP774361	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs48975800					SNP	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:60551277 () rs orientation: forward

Symbol	Name	Function Class
Itgb6	integrin beta 6	within coordinates
Tssr24212	transcription start site region 24212	1598 bp downstream
Tssr24213	transcription start site region 24213	1703 bp downstream
Tssr24214	transcription start site region 24214	1737 bp downstream