rs48975859 SNP Detail

Summary

• ID
  rs48975859
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:118267885 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAGA GAATTAGGTC TGGTGCAATG
  C
  CCTTCTTGAA GGACCACAGT GTAGG                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147307478	ENSMUSSNP6259087	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss321283069	CHEV_4_118083293	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48975859					SNP	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:118267885 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14683	CpG island 14683	866 bp distal
Med8	mediator complex subunit 8	within coordinates
Rr398422	regulatory region 398422	1227 bp downstream
Rr598388	regulatory region 598388	1426 bp distal
Rr598389	regulatory region 598389	1312 bp distal
Rr598390	regulatory region 598390	676 bp distal
Szt2	SZT2 subunit of KICSTOR complex	1415 bp upstream
Tssr1279	transcription start site region 1279	1296 bp downstream
Tssr38654	transcription start site region 38654	1314 bp downstream
Tssr38655	transcription start site region 38655	182 bp upstream
Tssr38656	transcription start site region 38656	1048 bp upstream
Tssr43049	transcription start site region 43049	1406 bp upstream