rs48976421 SNP Detail

Summary

• ID
  rs48976421
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:117012599 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATGACAAGT CCTTGCATTG
  GCAAGTGGTG TACAGGTGGC CAAGACGGCC ATAACCACGC CTAAGGATAC GTTTTCATCA
  CCCTAGTTAC CTCCAGAAAA AGCCAGACCC CCCCTAACAC AGGAAGAACC CCAGTAAGGA
  ACACACCAAG CTTGCAGCTC TCCCACTCCT AGGCTCCAGT AGACCCTAAG CTTGGAGATT
  R
  GGGTGCACAG ACCCTGCACG TGGACACACT TCCATGTCCA GTCGCCAGCA CCGAGAAACC
  TGAGCCTTAC AAAGGTGATC ACAGCCACTC GTGTTCCCCA GCAAACACGC TCTAGCGCAG
  GGGAAGGCAG CCTCTCCCAG TCGTCCTCCC CCCGACCCCC GCACGCACCT TCGTGTTGGC
  AGCGGGCCGT CCCAGCTCAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147285251	ENSMUSSNP3380325	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48976421					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117012599 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14653	CpG island 14653	within coordinates
Gm22980	predicted gene, 22980	1240 bp upstream
Gm26330	predicted gene, 26330	113 bp upstream
Rps8	ribosomal protein S8	within coordinates
Rr377051	regulatory region 377051	890 bp downstream
Rr398411	regulatory region 398411	517 bp upstream
Rr598069	regulatory region 598069	831 bp proximal
Snord38a	small nucleolar RNA, C/D box 38A	828 bp upstream
Snord55	small nucleolar RNA, C/D box 55	369 bp downstream
Tssr38607	transcription start site region 38607	1564 bp downstream
Tssr42956	transcription start site region 42956	442 bp downstream
Tssr42957	transcription start site region 42957	673 bp downstream
Tssr42958	transcription start site region 42958	720 bp downstream
Tssr42959	transcription start site region 42959	742 bp downstream
Tssr42960	transcription start site region 42960	783 bp downstream
Tssr42961	transcription start site region 42961	797 bp downstream