rs48976870 SNP Detail

Summary

• ID
  rs48976870
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:166669815 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTGGTGTG AGCACTCCAT
  TACCCACAGC AGTGCTGCTC TGGCACTGAG AATGCCCCAG GAGGTGGTGC AGGAGCAGCC
  CACAGCTTCC CGTGTGATGA TGTCCTGGTG GCCAGGGGCC TGTGCTCCTT AGCTACAGTC
  ACATTTCCCC AGTGGGGAAA CTGTAGTCAG TTGTAGGTTG ACTGTGTTTG ATATATGTGA
  Y
  ACATGACATG ACATGCTCCC AGCCTCATCG TTGATGGTGT TAATGTGTTC TCTCAGGTGT
  AGAAACAGGT ACAGCCACAT CTGATTATTT GTGGCAGTTC TGATCTACAG TCACTATGAA
  CGTGAACTAA CCAGCCCCAG GAAGTGCGGG CTTGGGTTCC CAGTTCTCCA TTTTGGACTA
  GCTGATCAGT GTATAAGTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148259128	ENSMUSSNP4154667	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48976870					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:166669815 () rs orientation: forward

Symbol	Name	Function Class
Arfgef2	ARF guanine nucleotide exchange factor 2	within coordinates
Rr397495	regulatory region 397495	860 bp downstream
Rr570392	regulatory region 570392	1062 bp distal
Tssr21779	transcription start site region 21779	823 bp downstream