rs48978778 SNP Detail

Summary

• ID
  rs48978778
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:13777978 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCTCAGTG GTTAAGAGCA
  CCAACTGCTC TTCCAAAGGT CCTGAGTTCA AATCCCAGCA ACCACATGGT GGCTCACAAC
  CATCTGTAAT GAGATCTGAC GCTCCTCTGG TGCATCTGAA ATCTGAAGAC AGCTACAGTG
  TACTTAGATA TAATAATAAA TAAATATTTA AAAAGAAAAA AAAAAGGCCA CAGGGTCCAG
  Y
  AGTGCCATGC TCACTGCTCC CTGTGGCTCC ATGGGGGAAA GCATTTGTGA GACACCCATG
  TTTGTAGTTT TCTCTGATCC TCATGGCTTC TTTCGGAGAG AATTCCGAAC ATCTCTAGAA
  TCCCCTATAA CTTCAGGCTT CAACCCTATA ACTTCCAGTG TAGGAAAAAG CATCTCAGTG
  GAAGGGTGGG GGTGGGGTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60536933	NES16556523	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs48978778					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60536933	NES16556523	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:13777978 () rs orientation: forward

Symbol	Name	Function Class
Gm49936	predicted gene, 49936	within coordinates
Rr392310	regulatory region 392310	885 bp downstream
Rr522380	regulatory region 522380	1338 bp distal
Rr522381	regulatory region 522381	1019 bp distal
Rr522382	regulatory region 522382	1247 bp proximal