rs48979556 SNP Detail

Summary

• ID
  rs48979556
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:73996272 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGTACCTGGA AGAGAGGGAG AGCAGGTAGG ACTAAAGTGA
  GTCCTGGCCC GCTGGAGCAG ACCTTCCTCC CTTTCCCTCA TTGATGAAAG ACCAACGCTG
  Y
  CCATCAGTGT GGACAGGCCC TGCATCCTTC CCTTTGCCTT TGGTTGGGGC AGGGTCCTTG
  CTGGGCTGTG GTTAGTCCAT CTGGCTCCTC TTTGGCTGGC                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61845039	NES17772401	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48979556					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61845039	NES17772401	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:73996272 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5855	CpG island 5855	48 bp distal
Gm30303	predicted gene, 30303	within coordinates
Nkd2	naked cuticle 2	522 bp upstream
Rr482617	regulatory region 482617	423 bp distal
Rr482618	regulatory region 482618	205 bp distal
Tssr123198	transcription start site region 123198	534 bp upstream