rs48979685 SNP Detail

Summary

• ID
  rs48979685
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:117038323 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCCCGGCTTT GTTTTGTTTT TCAAGACAGG GTTTCTCTGT
  ATAGCCCTGG CTGTCCTGAA ACTTACTTTG TAGACCAGGC TGGCCTCGAA CTCAGAAATC
  T
  GCCTGCCTCT GCCTCCCGAG TGCTGGGATT AAAGGCATGA GCCACCATGC CCGGCTCCGG
  AAGGGAAAAT TTAATTCTCT TTTAAAAAAT ACAAACAGC                       
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss147286062	ENSMUSSNP6458445	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	A/J
rs48979685					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117038323 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14654	CpG island 14654	1034 bp proximal
Gm68778	predicted gene, 68778	877 bp downstream
Kif2c	kinesin family member 2C	within coordinates
Rr398412	regulatory region 398412	1380 bp upstream
Tssr42965	transcription start site region 42965	1411 bp downstream
Tssr42966	transcription start site region 42966	1497 bp downstream
Tssr42967	transcription start site region 42967	1823 bp downstream