rs48979712 SNP Detail

Summary

• ID
  rs48979712
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:30734981 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAAG TGGAAGTCCT CAATGTGACA
  Y
  GCTACAAAGT CTTTAGATCT TCTCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss148696826	ENSMUSSNP4484421	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss322138584	CHEV_7_31820575	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs48979712					SNP	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30734981 () rs orientation: forward

Symbol	Name	Function Class
Fxyd5	FXYD domain-containing ion transport regulator 5	Intron
Gm38984	predicted gene, 38984	1287 bp upstream
Gm71772	predicted gene, 71772	1433 bp upstream
Rr644978	regulatory region 644978	1198 bp distal
Rr644979	regulatory region 644979	477 bp distal
Rr644980	regulatory region 644980	532 bp distal
Rr644981	regulatory region 644981	1343 bp proximal
Rr644982	regulatory region 644982	1444 bp proximal
Tssr2191	transcription start site region 2191	71 bp upstream
Tssr65830	transcription start site region 65830	288 bp downstream
Tssr65831	transcription start site region 65831	1432 bp upstream
Tssr65832	transcription start site region 65832	1852 bp upstream
Tssr71891	transcription start site region 71891	901 bp downstream
Tssr71892	transcription start site region 71892	1462 bp downstream