rs48980319 SNP Detail

Summary

• ID
  rs48980319
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:45862064 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTCCAGAAGT TCCTTTGGAG CAGGGGATGA CCTTGAGGCA
  GTGTTGATAT CATATCTGAT CTCTGGGGTT AGGAAATAAG CATACTGAGG TGCCAGGTTT
  Y
  CCCTTGCCTC TTCGGATCAG GAAAGCCACT CCTTGTATCC CCCCACCTCT GCCTGCTCCC
  CCCACCCCAG TGCTTCTGCT TCCACGCCCC ATTTCCTATT                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60259856	NES15755814	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48980319					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60259856	NES15755814	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:45862064 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9192	CpG island 9192	1153 bp distal
Rr405301	regulatory region 405301	992 bp upstream
Tmem151b	transmembrane protein 151B	1461 bp upstream
Tssr148206	transcription start site region 148206	1555 bp upstream
Tssr148207	transcription start site region 148207	1470 bp upstream
Tssr148208	transcription start site region 148208	1419 bp upstream