rs48980708 SNP Detail

Summary

• ID
  rs48980708
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:106805768 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAGGTTTTT TCCCCTTTGC
  CAATGACCTA TCTAGTGTCA GGTTTTTAAT GCTAGAACCT GGAAGGAAAT CCTGTCAGAT
  ACCAACTTGG TTGGGGTTGG CGAGAGCGGC TTCTGTGACT CCCCCTTTCC CCCATGGAGT
  TCACGTTTAT ACCACACTTG CCCCAAATGT AATTTCCTTC AGACAAATTT ACTTTCCTAG
  Y
  TCCAGCATTA ATGTGTGGAC TTCATAAGGG CAGGCGCCTT GTCTTTCCAC CCTAGTGTCT
  ACAGTGTCTT ACAACTAAGC GCTCTGGATA TTTTTGGGTG AATAATCAAT TTCCAAAGAC
  CAGCTTTAAT TTTCTTTTCG GTAGTCTCTA ACTTGTAATA TATCCCCAAA TGACCTTGAC
  CTTCTGACTC TTCTGTCTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60780034	NES16424350	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48980708					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60780034	NES16424350	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:106805768 () rs orientation: forward

Symbol	Name	Function Class
Rr18766	regulatory region 18766	1767 bp distal
Rr371817	regulatory region 371817	1897 bp downstream
Serpinb5	serine (or cysteine) peptidase inhibitor, clade B, member 5	within coordinates