rs48980743 SNP Detail

Summary

• ID
  rs48980743
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172039488 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGGT TGGAGATGAC CTGATACTTA
  R
  GTGTGAATGA AGAACAGGAA ACTCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss120007478	PARCsnp_1.17817	PARC_SEQ	INBRED	f	SNP			G	A
ss120010387	PARCsnp_1.07461	PARC_SEQ	INBRED	f	SNP			G	A
ss146184056	ENSMUSSNP4988949	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		A
ss320123265	CHEV_1_174142052	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs48980743					SNP	A	A	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172039488 () rs orientation: forward

Symbol	Name	Function Class
Casq1	calsequestrin 1	within coordinates
Gm17224	predicted gene 17224	within coordinates
Tssr10179	transcription start site region 10179	1576 bp downstream
Tssr15168	transcription start site region 15168	1795 bp upstream
Tssr15169	transcription start site region 15169	1717 bp upstream
Tssr15170	transcription start site region 15170	1695 bp upstream
Tssr15171	transcription start site region 15171	1677 bp upstream
Tssr15172	transcription start site region 15172	1596 bp upstream
Tssr15173	transcription start site region 15173	1502 bp upstream
Tssr15174	transcription start site region 15174	1448 bp upstream
Tssr15175	transcription start site region 15175	62 bp downstream
Tssr15176	transcription start site region 15176	1143 bp downstream
Tssr15177	transcription start site region 15177	1197 bp downstream
Tssr15178	transcription start site region 15178	1221 bp downstream
Tssr15179	transcription start site region 15179	1243 bp downstream
Tssr15180	transcription start site region 15180	1448 bp downstream