rs48980954 SNP Detail

Summary

• ID
  rs48980954
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:73950185 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGAT CCGGGATGAA GAGTACTGAG
  M
  GTCTGAAGAG CTGGGGTTTC TCACC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147453907	ENSMUSSNP3796981	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48980954					SNP	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:73950185 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10208	CpG island 10208	1093 bp distal
Gm58443	predicted gene, 58443	within coordinates
Gm58445	predicted gene, 58445	608 bp upstream
Me2	malic enzyme 2, NAD(+)-dependent, mitochondrial	1665 bp upstream
Rr353118	regulatory region 353118	384 bp distal
Rr405736	regulatory region 405736	1384 bp downstream
Tssr153885	transcription start site region 153885	1661 bp upstream
Tssr153886	transcription start site region 153886	1628 bp upstream
Tssr153887	transcription start site region 153887	1400 bp upstream
Tssr153888	transcription start site region 153888	1320 bp upstream
Tssr153889	transcription start site region 153889	571 bp upstream