rs48981127 SNP Detail

Summary

• ID
  rs48981127
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:71963129 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ggaagctct tggggttgac actaagttgt
  tggctgagga cgcagcctgt ttggagcctg aggatctgac tcacaccatt ggctggcaag
  tgggtgttaa ttgttggcaa gatggttagg tgcctccctg caaggggcct ccctgcaggc
  Y
  gcttcagaat tctcacagca tggtgactgg gctctccagg agggatgctc tacagaggat
  caaAAGGATG TAATCTCAGG ACATTGTACC TCTTCCAAAG ACAAAGGAAG CAGACAGTGG
  ATTATGAAAG GGAGAATGTT CGAAGATTTT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss144648012	ENSMUSSNP2824048	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss319787564	CHEV_1_71970544	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48981127					SNP	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:71963129 () rs orientation: forward

Symbol	Name	Function Class
Gm70455	predicted gene, 70455	604 bp downstream
Gm70563	predicted gene, 70563	1785 bp upstream