rs48982086 SNP Detail

Summary

• ID
  rs48982086
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:130133920 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTATGGTG AAGGGTGACC
  CCCAGACAAA GTAGAAAGCA ACCTCCTGGG AGACAGGAGG AACCTGAATC CAGAGCCTTG
  TGCTGAAAGA GTACCTGAAA TAGGAGGGAA AGTCTTAAAG CAGAAAGCTC GGGAGAAGGA
  ACCCAGAAAC CATCAAGGGC CGACTAGAAA GCCCAACGTG GATGAGCGGG GCAGAGGAAC
  K
  GGCAGCAGGA TGGACTGACA CTTGGTGCTG CTAGGGGCAT AGCCCAGCCT GACTTGCCAG
  ACGATGTAAT AGCTCCTTGG GTGTAAAGCA TAGGCCAAGC CACACCAAAA ATATTTAACC
  ATTTTTTAAC CCACGAAAGG GAAAAAAATT TCATCTCGGG ACAACCTATC TGTTGGCTTG
  GCCAGCTAAC TTTACAACTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61062482	NES16062235	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48982086					SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61062482	NES16062235	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:130133920 () rs orientation: forward

Symbol	Name	Function Class
Gm57247	predicted gene, 57247	747 bp downstream
Nsmce4a	NSE4 homolog A, SMC5-SMC6 complex component	336 bp downstream
Rr153982	regulatory region 153982	1920 bp distal
Rr153983	regulatory region 153983	1320 bp distal
Rr153984	regulatory region 153984	720 bp distal
Rr153985	regulatory region 153985	1081 bp proximal
Rr169359	regulatory region 169359	120 bp distal
Rr169360	regulatory region 169360	1015 bp proximal
Rr381489	regulatory region 381489	within coordinates
Tssr69470	transcription start site region 69470	877 bp downstream