rs48983424 SNP Detail

Summary

• ID
  rs48983424
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135695658 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AACTG AGCCTAGGGA TTATCTGGTG
  C
  TCCAGCCCCT TTGAGACTCT GGTTT                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145545581	ENSMUSSNP5879557	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
ss319993150	CHEV_1_137664497	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48983424					SNP	C	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135695658 () rs orientation: forward

Symbol	Name	Function Class
Cpgi797	CpG island 797	942 bp distal
Phlda3	pleckstrin homology like domain, family A, member 3	within coordinates
Rr372092	regulatory region 372092	973 bp downstream
Rr419269	regulatory region 419269	1791 bp distal
Tssr223	transcription start site region 223	1841 bp downstream
Tssr224	transcription start site region 224	1719 bp downstream
Tssr8974	transcription start site region 8974	1745 bp downstream
Tssr8975	transcription start site region 8975	1712 bp downstream
Tssr8976	transcription start site region 8976	1695 bp downstream
Tssr8977	transcription start site region 8977	1680 bp downstream
Tssr8978	transcription start site region 8978	1663 bp downstream
Tssr8979	transcription start site region 8979	90 bp downstream