TATTTTTAGG TAAATATTTA CGCTGCATGT ATGAAGAAAC TTGGGGCTGG TGAGTAGCTC TGTGGTTTAA AGAGCCTGCT ACTCAAGCGT GAAGATCAAA GTTCATTTCC CCAGCGCCCT CATAAATGCC GGGTGGGGGT GGTGGCAGGG TTCGAGAGGC AGAGACTGGA TCCCTGAAGC AAGCTGGCTA GCTAGACCAA Y CAAATCAGTT ATGTTACATA CAGTGGATAA CAACCCGGGA AAACAGTCAA CATCAACCTA TGGCTTCCAC ATGCACACGA ACCCACACAC AAACATGTAC TTACATGCAA ACATGCATAC ACACATGCAC ACACACTGTA CAGTTAAACA CACACGCCTG CGTAAGTCAA AACGGAACTT TAAAGTGTTT TTAGTGTAAG Y = C/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss52449558 | NES15419797 | PERLEGEN | MM_PANEL2 | f | SNP | T | T | T | T | T | T | C | T | T | T | T | T | T | T | T |
SNP Consensus Information | ||||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
||||
rs48983933 | SNP | T | T | T | T | T | T | C | T | T | T | T | T | T | T | T |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss52449558 | NES15419797 | PERLEGEN | MM_PANEL | f | SNP | C/T |
Location: Chr12:85150149 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Gm38355 | predicted gene, 38355 | 1028 bp upstream | ||||||
Prox2 | prospero homeobox 2 | within coordinates | ||||||
Rr264587 | regulatory region 264587 | within coordinates | ||||||
Rr268707 | regulatory region 268707 | 1750 bp distal | ||||||
Rr269802 | regulatory region 269802 | 1210 bp distal |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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