rs48984228 SNP Detail

Summary

• ID
  rs48984228
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:43922501 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATATA TGCATACCAT ATATATGTAC
  W
  CGTTGAAGCT AACAGCCCTT CTATG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss145670899	ENSMUSSNP5404654	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss325395829	CHEV_17_43748559	CHEVERUD	SCREENING_POP	f	SNP			A	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48984228					SNP	A	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:43922501 () rs orientation: forward

Symbol	Name	Function Class
Pla2g7	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	within coordinates
Rr527133	regulatory region 527133	within coordinates
Rr527134	regulatory region 527134	169 bp proximal
Tssr144713	transcription start site region 144713	299 bp downstream
Tssr144714	transcription start site region 144714	214 bp downstream
Tssr144715	transcription start site region 144715	267 bp upstream
Tssr148139	transcription start site region 148139	417 bp downstream
Tssr148140	transcription start site region 148140	475 bp downstream
Tssr148141	transcription start site region 148141	523 bp downstream
Tssr148142	transcription start site region 148142	572 bp downstream