rs48985461 SNP Detail

Summary

• ID
  rs48985461
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:42790215 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAATTAAAT GTCATTGTTC
  ATCAAAGGGA CCTAACAGAT ATCTACAGAA TATTGTAGCT AAATACCAAA GAATATACAT
  TCTAATGAGC AACATTAAGT GGACTCAATA GGCTGTGTAT ACACATGTGC ATCTATATTT
  ATACACACAC ATATGTAACA ATAATAAATA AAGATAATAA ATTTGGGAGG GAGAAGGGAC
  R
  CAGGAGGAGT TAGATGGAGA GTGGAGAAAA GCAGGAGTGA TGTAGGTGTG CAATCCTCAT
  GTATGAAGTT CTTAAAATAT AAGATAAAAA AAAACTTCAA TTAGTGAAAA AAAATCTGTT
  TACCTTCCAT GATCAAATTG GATTCATTCA GGAGATGCAG GGATAGTTCA ACAAACATAA
  ATCAATAAAT GTAATAAATC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	MSM/Ms
ss147007331	ENSMUSSNP4150287	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	MSM/Ms
rs48985461					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:42790215 () rs orientation: forward

Symbol	Name	Function Class
D18Mit23	DNA segment, Chr 18, Massachusetts Institute of Technology 23	852 bp proximal
Ppp2r2b	protein phosphatase 2, regulatory subunit B, beta	within coordinates