rs48985477 SNP Detail

Summary

• ID
  rs48985477
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:17691882 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTATACCT AGTAGGCCTA
  TGCTGTAATG GCCCACTACT AGCCTCCTGG TGCTGCATCT TTCAGAAAAG GATGAGTGGT
  GTGATGGTCT GATGGAATTG GTGTGTCAAA AGAGGTCGTA CATCAATGGA ATCTCTGAAA
  AATCTGCTAA TAGGAACATG TTGCCTGGCT GGGAAGGGCA GCCAGAGAAA TATATGACAG
  R
  TAGTATGGAG CAGGAGGACA AAAGTGCCCG GCAAAATACT ATATGCCATC TACATATCAT
  TTTTAGATAG ATGATGATGA GGTGGTGGTA GTAAAATTGG TGGTAGGAAC CCACAACATA
  GTTCCCTCTA GGTAACAATC AGGCTGTAAC TAGAGGCCAT TGCTGGGAGA AACACAGAGG
  TGATCTGAAT CTTGATGTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss133020614	ENSMUSSNP6748033	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48985477					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17691882 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17178	CpG island 17178	1792 bp proximal
Gm55211	predicted gene, 55211	1543 bp upstream
Rr626833	regulatory region 626833	320 bp proximal
Rr626834	regulatory region 626834	1694 bp proximal
St7	suppression of tumorigenicity 7	1697 bp upstream
Tssr55085	transcription start site region 55085	1724 bp upstream