rs48986036 SNP Detail

Summary

• ID
  rs48986036
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:38125154 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAATGAAAA CCTGGGAACC
  ATGAATCTTG TTGCTTGCCA CACTAGAGGG AGGCTCACTC TGACTTCTCA ATATGGGCCT
  TGAAGGTTGC CTCCCATTGG GAGACTTGAG CCTGCTCCCC CCCTCCCCCG CCCTCCCCCC
  TCCCCCCTAC ACACACGCCC AGGTCCATCT CCTCACCCTC TCAGTTCTAC CTGCCAGGCT
  M
  TCCAGTAGTG CTTTTTCTCT GGTTCATTTA GGTATTGCTT GCTGTGCCTT AGAAATGTTG
  TGGTGTTAAC AGTTTTTATT GTCTTGCTTC AAACACATGT ATCTTGGTTT CATTGTTAAC
  TTATTTTTAG TCTCTTGATG ACAACTCCTT CCATTACATG AAGGCTAAGG GAAAATGATT
  ATTTTAGTCA TTGTCTCTCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61763441	NES17703748	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48986036					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61763441	NES17703748	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:38125154 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr388285	regulatory region 388285			1913 bp upstream
Rr477597	regulatory region 477597			167 bp distal
Rr477598	regulatory region 477598			1204 bp proximal
Rreb1	ras responsive element binding protein 1			Intron
				Noncoding-Transcript-Variant