rs48987400 SNP Detail

Summary

• ID
  rs48987400
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:16190707 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCTGTGGTGC CCACTTGGCA AAAGCAGAGT GTATTATATG
  ACCCCAGACA AAAGTTCTGC TGCGCTCGCT CCAGGTCCCA TAAGATCTCC CGGCTGGCTT
  R
  AGGACCCTGG ACATTTAAAT ATGAATGAAT GGCCCAAATG AATGGTTCTG GATTCTGTCA
  GGCAGAACAA CCAGCTGTCT CAGGCAGCCC CTCTGCCCCA                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52620147	NES15517507	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48987400					SNP	A	A	G	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52620147	NES15517507	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:16190707 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5296	CpG island 5296	1202 bp proximal
Inhba	inhibin beta-A	within coordinates
Tssr118431	transcription start site region 118431	1714 bp downstream
Tssr118432	transcription start site region 118432	1683 bp downstream
Tssr118433	transcription start site region 118433	1670 bp downstream
Tssr118434	transcription start site region 118434	1649 bp downstream
Tssr118435	transcription start site region 118435	206 bp upstream
Tssr118436	transcription start site region 118436	562 bp upstream
Tssr118437	transcription start site region 118437	802 bp upstream
Tssr118438	transcription start site region 118438	925 bp upstream
Tssr118439	transcription start site region 118439	942 bp upstream
Tssr118440	transcription start site region 118440	1161 bp upstream
Tssr118441	transcription start site region 118441	1251 bp upstream
Tssr118442	transcription start site region 118442	1497 bp upstream
Tssr118443	transcription start site region 118443	1978 bp upstream