rs48987580 SNP Detail

Summary

• ID
  rs48987580
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:87751868 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCATCTTCA GCCTGCATTC
  CAAATTTTAT ACAAATCTTT TATAGAAGAA TTGCCCATGT CAATATATGT TCAGAGTTAA
  ATATTAACCA TAAATTCGCA GCAATGCTGT ATTGTGTCAT TGAAGTTCCC AGATTTCTGT
  CCTGAATTTC ACCGGTGGTT CTGCTTCTTG GTCAAGTCCA GGGTATAGGC CAAAGAACAT
  Y
  GGGTATTTAC AAAAAGGCCT GTGAGGTAAC TTTTAAAAAG ATCACTGAAC TTTTATTTTG
  TACTGTGGTA TCAGACACAA AGACATATTA GTTCACCATG GCTGCTATAA CACCACAGAC
  TAAATGGCTT AACCCACAGA CACATTTTCC CCTCATAGTT CTAGAGAGTG GAAGTCCTCA
  CTCAAGGTAT CAGTTCCTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61301450	NES16910376	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48987580					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61301450	NES16910376	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:87751868 () rs orientation: forward

Symbol	Name	Function Class
Igf1	insulin-like growth factor 1	within coordinates
Tssr95096	transcription start site region 95096	1619 bp downstream
Tssr95097	transcription start site region 95097	1593 bp downstream
Tssr95098	transcription start site region 95098	1467 bp downstream
Tssr95099	transcription start site region 95099	693 bp downstream
Tssr95100	transcription start site region 95100	295 bp upstream
Tssr95101	transcription start site region 95101	352 bp upstream
Tssr95102	transcription start site region 95102	386 bp upstream
Tssr95103	transcription start site region 95103	421 bp upstream
Tssr95104	transcription start site region 95104	470 bp upstream
Tssr98816	transcription start site region 98816	652 bp upstream