rs48987602 SNP Detail

Summary

• ID
  rs48987602
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:106104394 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTAAC TCTTAATGTG GTATCTAAGG
  S
  AAAGCGTGTA AAGGGAATCT ATTAA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss145614764	ENSMUSSNP686068	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss322371904	CHEV_7_113648701	CHEVERUD	SCREENING_POP	f	SNP		G	C
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs48987602					SNP	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:106104394 () rs orientation: forward

Symbol	Name	Function Class
Gm72977	predicted gene, 72977	within coordinates
Gvin-ps7	GTPase, very large interferon inducible, pseudogene 7	within coordinates
Tssr68401	transcription start site region 68401	1549 bp downstream
Tssr74117	transcription start site region 74117	1661 bp upstream
Tssr74118	transcription start site region 74118	1614 bp upstream
Tssr74119	transcription start site region 74119	1216 bp upstream
Tssr74120	transcription start site region 74120	1199 bp upstream
Tssr74121	transcription start site region 74121	1136 bp upstream
Tssr74122	transcription start site region 74122	1119 bp upstream
Tssr74123	transcription start site region 74123	1086 bp upstream
Tssr74124	transcription start site region 74124	1041 bp upstream
Tssr74125	transcription start site region 74125	1030 bp upstream
Tssr74126	transcription start site region 74126	994 bp upstream
Tssr74127	transcription start site region 74127	843 bp upstream
Tssr74128	transcription start site region 74128	763 bp upstream
Tssr74129	transcription start site region 74129	232 bp upstream
Tssr74130	transcription start site region 74130	183 bp upstream
Tssr74131	transcription start site region 74131	within coordinates
Tssr74132	transcription start site region 74132	154 bp downstream
Tssr74133	transcription start site region 74133	853 bp downstream
Tssr74134	transcription start site region 74134	1080 bp downstream
Tssr74135	transcription start site region 74135	1163 bp downstream
Tssr74136	transcription start site region 74136	1231 bp downstream
Tssr74137	transcription start site region 74137	1297 bp downstream
Tssr74138	transcription start site region 74138	1327 bp downstream
Tssr74139	transcription start site region 74139	1361 bp downstream
Tssr74140	transcription start site region 74140	1416 bp downstream
Tssr74141	transcription start site region 74141	1816 bp downstream
Tssr74142	transcription start site region 74142	1959 bp downstream