rs48987736 SNP Detail

Summary

• ID
  rs48987736
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:163442860 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTCTCTCT CTCTCTCTCA
  CTCACACACA CACACAAAGA GAGAGAGAAA GAGAGAGAGA AAGAGAGAGA GGGAGAGAGA
  ACACAGAGGG GGTATTCAGG ACTCAGTCAG TTGCCGTTGT GACAACAGAA GCAAGATGTC
  GGAGTGATGT GGGGAAGACC ATGGACCAAA TAATACCAGT AGCTCAGTAG CTTCTGCAAG
  C
  TGGAAAAGAG AACCAGTACC CAGAGAGACA GCAGCCTTCC CAGCTCCCCG GTGTCTTTAG
  CAAAGCAACA AAATACATTT GTGTTATTTG AAGTCACTAT GTAGTAATTT GTTATAAATG
  GAACAGGAAA CTAACACTTA GATTTGGGCG GGGGGGGGGC GCGGACGGGG GACAGGACAC
  CTATTTAAAT GTGAGTTTCT                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ
ss148206370	ENSMUSSNP2645029	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ
rs48987736					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163442860 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12638	CpG island 12638	1058 bp proximal
Rr397464	regulatory region 397464	1599 bp upstream
Rr569431	regulatory region 569431	1233 bp distal
Rr569432	regulatory region 569432	1490 bp distal
Rr569433	regulatory region 569433	8 bp proximal
Rr569434	regulatory region 569434	884 bp proximal
Rr569435	regulatory region 569435	1072 bp proximal
Rr569436	regulatory region 569436	1268 bp proximal
Rr569437	regulatory region 569437	1393 bp proximal
Tssr21475	transcription start site region 21475	1354 bp upstream
Tssr21476	transcription start site region 21476	1391 bp upstream
Ttpal	tocopherol (alpha) transfer protein-like	1374 bp upstream