rs48988103 SNP Detail

Summary

• ID
  rs48988103
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:117539329 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGAAACTGTT TTCTCTATCC TTCTGTACTT TCTGGAATGG
  TGGTTCACAA ATGCTAGTGG AGAATGCTTT TGTTAGAGAT GCCCTGACCT GGAGTTTTGC
  W
  GGGATAATGC ACTCATCACA GTATCTTCCC ATCAGGGAAG ACCACCAAAG AAGTTGAAAT
  TCCCTGATAA TTGCCCTGAT ATATGATACT CATGAGATAA                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	PWD/PhJ
ss52610286	NES15494954	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	PWD/PhJ
rs48988103					SNP	T	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52610286	NES15494954	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:117539329 () rs orientation: forward

Symbol	Name	Function Class
Gm54711	predicted gene, 54711	1262 bp downstream
Rapgef5	Rap guanine nucleotide exchange factor (GEF) 5	within coordinates