rs48988622 SNP Detail

Summary

• ID
  rs48988622
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:13009659 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTTCTTTC TTCCTCTATG
  TTGCGCTTTC TCCTCCCTTC TTTCCATTCT TTTAGTCATT GTCTCTTAGA TTAGATTCTC
  AGTGGTTCAA GAGCTGGGAT AATCAACTGT GGTCTCAAAA CACCCAGCAT GCACACAAGA
  AGTACTCAAT AAATGGTTGT TAAATGTTGA ATTGTGTCCT GGTAGCAAAG GCAGATTCTG
  R
  ATTAGGCCTG TCTCTTTTGC AAGTGCTCAC TCACTAGACA GTTGTGTGAG GACACATGGT
  TGAAGTTGTT GCTCTGGTGC TAGACCTCTG AAGCTCCACT TCTACAATAA AGAACAAGAA
  AGAACCAGAG CATACCCCCA CAACAAATGT CGATATACTT GGGGTAAGAA CAGCTATGGA
  GTGCTTACTC CATGTTGGAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60970732	NES16158042	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48988622					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60970732	NES16158042	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:13009659 () rs orientation: forward

Symbol	Name	Function Class
Lig1	ligase I, DNA, ATP-dependent	1580 bp upstream
Tssr64537	transcription start site region 64537	1422 bp upstream
Tssr64538	transcription start site region 64538	1521 bp upstream
Zswim9	zinc finger SWIM-type containing 9	within coordinates