rs48989243 SNP Detail

Summary

• ID
  rs48989243
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:104694550 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCCA GCCCCAAGAG CAGGGACTTG
  W
  AAGTCTGAGT GTTTTGACCC CCAAA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135571320	ENSMUSSNP2725433	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48989243					SNP	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:104694550 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13651	CpG island 13651	1310 bp proximal
Gm66976	predicted gene, 66976	1075 bp downstream
Ppm1j	protein phosphatase 1J	1216 bp downstream
Rhoc	ras homolog family member C	1800 bp upstream
Rr77009	regulatory region 77009	1050 bp proximal
Rr375521	regulatory region 375521	1975 bp downstream
Tssr31056	transcription start site region 31056	1338 bp upstream
Tssr31057	transcription start site region 31057	1559 bp upstream
Tssr31058	transcription start site region 31058	1608 bp upstream
Tssr31059	transcription start site region 31059	1792 bp upstream