rs48990103 SNP Detail

Summary

• ID
  rs48990103
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:24659432 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACGGG GTAGGTGTAG CCGCCATCGC
  C
  GCCGGCAGTG CTACGTGAGG CCTTA                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145355246	ENSMUSSNP3932412	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
ss325331708	CHEV_17_24577403	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48990103					SNP	C	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:24659432 () rs orientation: forward

Symbol	Name	Function Class
Dnase1l2	deoxyribonuclease 1-like 2	within coordinates
Eci1	enoyl-Coenzyme A delta isomerase 1	1142 bp downstream
Rr329768	regulatory region 329768	832 bp distal
Rr329769	regulatory region 329769	569 bp proximal
Rr337043	regulatory region 337043	529 bp distal
Rr340710	regulatory region 340710	within coordinates
Tssr146730	transcription start site region 146730	59 bp upstream
Tssr146731	transcription start site region 146731	1699 bp downstream