rs48990661 SNP Detail

Summary

• ID
  rs48990661
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30841628 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAGAGAGAT GGCTCAGGGG
  TGGAGTGTTT TTCTGGAAGA TATAAAGCCC TGGGTTTCTA TCCCAGCTTT GGCTGGGGGT
  GGGGGTGGGG ACATCCGAAC TGATGGGTTC GTGGGAGATT TTAGGATCAG TGCATTGCAG
  AACATCTATG TAAGGGGGCC ATTGCACAGG AGAATACTGT AGGGGCCCCA GCCAAAATGA
  R
  TGGGGATGGA CCACTGCGAG GGCCAAGACA ATAAACAGGC CAAGTTCAAC ACAAATGGGG
  ATCTGCTCTG ATGGGCATGT CTAGGTAAGC TGGGGGGAGG GGGGGAAGGT GTCTCCGCTG
  TGATCCTGGT GCGTGCCCCT CACCCCCATC CATCCATCAC TCACCTTCTC ACTCTCAGTA
  CAGATCTGAA TGGCATTGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60989106	NES16134670	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48990661					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60989106	NES16134670	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30841628 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18838	CpG island 18838	484 bp proximal
Gramd1a	GRAM domain containing 1A	within coordinates
Rr645030	regulatory region 645030	1943 bp distal
Rr645031	regulatory region 645031	1598 bp distal
Tssr71945	transcription start site region 71945	424 bp downstream