rs48991175 SNP Detail

Summary

• ID
  rs48991175
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:55683129 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATGTA GGTGGATGTC TGAGAAATAC
  W
  TGGATATTTC TATGGATATA ATAGC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss135190265	ENSMUSSNP5895796	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T
ss320775800	CHEV_3_55579630	CHEVERUD	SCREENING_POP	f	SNP			A	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48991175					SNP	A	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:55683129 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
9630024C22Rik	RIKEN cDNA 9630024C22 gene			within coordinates
Nbea	neurobeachin			Intron
				Noncoding-Transcript-Variant
Rr577001	regulatory region 577001			1100 bp distal
Rr577002	regulatory region 577002			78 bp distal