rs48992245 SNP Detail

Summary

• ID
  rs48992245
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:55658446 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGACGGGGA AGTGACACTG
  TAAAAGGGAA ATGACCTAGT CACAGGCATG GTGAGTCAGC ACATGGAGAC CTGGGTTAGC
  CACTCCTTCC TATACAGGCT GCTTCCTGAG AGGTGTGGGG CAAGACCAAG GTGGGGGGTC
  CTGGGAGGAG GAGCCACTGG CTCCCTGAAA AGGGGTGGAG ACATGAGGGA CCACTTCTCT
  Y
  GTGGGGTACT CAAAATGTGA GGGCTAAGCT GGTGGTCAGA GCACCACAGG GAAAGAGAGG
  CTAGTGAGAT TAAGGAGGGG AAAAGCCAGG GGACTGGACA GTGTTATGGG TGTGGGTGAG
  TCAGCCTGGG AGCTCCACTG AGCAGCCCAA CCCCCAAATC CCAGACATTA CCTCATCTTC
  CAGGCCTGGG CCCACAGCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss149037256	ENSMUSSNP570863	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs48992245					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:55658446 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5676	CpG island 5676	1851 bp proximal
Pdlim7	PDZ and LIM domain 7	within coordinates
Rr281453	regulatory region 281453	within coordinates
Tssr122709	transcription start site region 122709	1706 bp downstream
Tssr122710	transcription start site region 122710	1724 bp downstream