rs48992262 SNP Detail

Summary

• ID
  rs48992262
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:86350871 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTGT TTGTTTGGAG ATCAAACCTG
  R
  GGTATTTCCA ATACAAGGCA AACAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss61435975	NES16816078	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	G	A	G	G	G		G	A	G		G
ss136756117	ENSMUSSNP2081679	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A					G
ss323056353	CHEV_9_86362425	CHEVERUD	SCREENING_POP	f	SNP											G				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs48992262					SNP	G	G	A	A	A	G	A	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61435975	NES16816078	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:86350871 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22102	CpG island 22102	963 bp distal
Dop1a	DOP1 leucine zipper like protein A	within coordinates
Rr684098	regulatory region 684098	1654 bp distal
Rr684099	regulatory region 684099	1716 bp distal
Rr684100	regulatory region 684100	907 bp distal
Tssr2956	transcription start site region 2956	854 bp downstream
Tssr86391	transcription start site region 86391	1648 bp downstream
Tssr86392	transcription start site region 86392	1599 bp downstream
Tssr86393	transcription start site region 86393	1557 bp downstream