rs48992844 SNP Detail

Summary

• ID
  rs48992844
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:87455812 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTTTGCTC TGTTGGATGG
  CTTTTTGGGA TTGTCCCCAT TCTGCAGATG AGAAAAATGA GGCATGGGGA AACTAATACA
  ATACCGTTGG CAAATGGATG CAATCAAGCT TCAAATGTGG GCCAGTATAA TTGTTTTTTA
  TTTTTTTATT TTATTTTTTT TGCAGTGCTG ACATCTTATA CCAACCAAGT GCTACCCACT
  R
  AGATGCATTC GCAGCGCTGA TTTAGAATTC AATCTTAGGT ATCACATTGT ATTTCCCATG
  ACTATAATTA AATGGAGGAC AGCTCATGGA ATGCCTGCAA GAATGATAAG TGGTCCTGTT
  GCTAAAACTT CTTCCCAGAA GGAGAAAGAA CATATGCCCC TTCTAAGGCT CCAAAGAAAA
  ACTGGGGAAC CAGCAAGTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	MSM/Ms
ss137929667	ENSMUSSNP2053244	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	MSM/Ms
rs48992844					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:87455812 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4942	CpG island 4942	732 bp distal
Gm33444	predicted gene, 33444	within coordinates
Rr258424	regulatory region 258424	1789 bp proximal
Rr268858	regulatory region 268858	1190 bp proximal
Rr387583	regulatory region 387583	1657 bp upstream