rs48994675 SNP Detail

Summary

• ID
  rs48994675
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135766439 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTAG GATATATGTG GGAAACTGGA
  R
  AAGACAAGGG CAGGACCATC CATAT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145548069	ENSMUSSNP3953239	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	G
ss319993850	CHEV_1_137735278	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48994675					SNP	G	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135766439 () rs orientation: forward

Symbol	Name	Function Class
Rr419295	regulatory region 419295	1969 bp distal
Rr419296	regulatory region 419296	1116 bp distal
Rr419297	regulatory region 419297	within coordinates
Rr419298	regulatory region 419298	1907 bp proximal
Tnnt2	troponin T2, cardiac	within coordinates
Tssr9006	transcription start site region 9006	278 bp downstream
Tssr9007	transcription start site region 9007	206 bp upstream
Tssr9008	transcription start site region 9008	1970 bp upstream