rs48995166 SNP Detail

Summary

• ID
  rs48995166
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:31895949 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AACAA GTACTAGGGC GGGGGCACAC
  Y
  GTGGGGTGCT CATTGCTTCC TGAAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss145462584	ENSMUSSNP709892	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T		T
ss325359832	CHEV_17_31813920	CHEVERUD	SCREENING_POP	f	SNP				T		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs48995166					SNP	T	C	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:31895949 () rs orientation: forward

Symbol	Name	Function Class
Cryaa	crystallin, alpha A	956 bp upstream
D17Rua3	DNA segment, Chr 17, Rutgers University 3	1540 bp proximal
Gm50222	predicted gene, 50222	within coordinates
Tssr143680	transcription start site region 143680	949 bp upstream
Tssr143681	transcription start site region 143681	1949 bp upstream
Tssr147305	transcription start site region 147305	1134 bp downstream
Tssr147306	transcription start site region 147306	1156 bp downstream
Tssr147307	transcription start site region 147307	1206 bp downstream
Tssr147308	transcription start site region 147308	1523 bp downstream