rs48995944 SNP Detail

Summary

• ID
  rs48995944
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:79886981 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCCCAGGG CTTTGATATG
  GGGGGACCCG GTTACAGGCC AGCTGTGAGC CCGGAGTCAG TCTCCTTTTG TTATGGGGAT
  GAAGCTTAAC TGGCTAATCT TTTTTTCTTT TTCTTTTTTT TTTTTTTAAT CCCCCCCCCC
  TTAACTGGCT AATCTTAATA ACAAACCTGA AGGCTATTCT CTGTCCTCCG TTTAGCGGCC
  Y
  GGCCTACTGT CCCTAGGTGG CTGCTCTACC CGGAGCACTC CCTTAGTTAA ATTCCACTTT
  GCATAACTTA ATCTTTCTTA AGTCCTTCTA GCAGGTTGTC CACGACCGCG GCTTCTCATT
  CCCAGGGTCC CCTGTTGGTG GCAATGGCTC TGTCTTTCCA GTGCTTGGGG AGCAAGAGGC
  GAGAAGCTCC GAGGAGCCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	PWD/PhJ	WSB/EiJ
ss61291525	NES16900886	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	PWD/PhJ	WSB/EiJ
rs48995944					SNP	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61291525	NES16900886	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:79886981 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gpx4	glutathione peroxidase 4			Intron
				Noncoding-Transcript-Variant
Rr384983	regulatory region 384983			within coordinates
Rr435055	regulatory region 435055			within coordinates
Rr435056	regulatory region 435056			1269 bp proximal
Rr435057	regulatory region 435057			1851 bp proximal