rs48995981 SNP Detail

Summary

• ID
  rs48995981
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:39834536 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATAATTCTGA ATTCACTCTG GGCAATAGGT GGTGCTGTTG
  TATGGTTCTT TAAGCTAAGA TTTAAGTTTG GGGAAATTCT GTGTGTTGTG TAGTAAATCA
  R
  ATCTCCCTAT TCAGAAATGT GAAAAGCGCT CTCGGAAAGA TAAACGAGAA CATTTATGTT
  CCTCAATTAG TGGAACAAAA TTAAGCTTTG GATCTTCTTG                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	WSB/EiJ
ss61271505	NES16888129	PERLEGEN	MM_PANEL2	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	WSB/EiJ
rs48995981					SNP	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61271505	NES16888129	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:39834536 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1451	CpG island 1451	1147 bp proximal
Mfsd4b3-ps	major facilitator superfamily domain containing 4B3, pseudogene	within coordinates
Mfsd4b5	major facilitator superfamily domain containing 4B5	within coordinates
Rr214609	regulatory region 214609	1736 bp distal
Rr214610	regulatory region 214610	within coordinates
Rr224689	regulatory region 224689	664 bp proximal
Rr227431	regulatory region 227431	1137 bp distal
Rr401837	regulatory region 401837	1630 bp upstream
Tssr97348	transcription start site region 97348	1604 bp downstream
Tssr97349	transcription start site region 97349	1632 bp downstream
Tssr97350	transcription start site region 97350	1655 bp downstream
Tssr97351	transcription start site region 97351	1703 bp downstream