rs48996506 SNP Detail

Summary

• ID
  rs48996506
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:136508169 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATAAGTTCT GTGACTCTAG
  AGAACCCTGA CTAATACAGT TGGTTTTTTA AAGAGAAGGA CTCCTCTGTT AAAATGGTTT
  GAGCTTTAAA GGACAGGATC AAAGAGAAAC TGTTGAGTTT AGGGTGAGCA TGACTTCGCT
  CTCAGGCAAG GAAAAGAAAA GCAGAAGCTA TGGCCGCCGA GGTTAGTAGA GGGCTGGCCG
  T
  GGCTGGCAGA GATGGCATTT GGAGGCATCA CCCGCATACT TTCCTGAATC CATGGGAGAA
  TCCTACCTGT ACCAGGTCTC TGCTGCTTTG TATTCACCAA GTGGAGACAC TGAGGTGGTA
  CAATCTCATC AGCTCAGCAA GCTTCCGTTT CTGTGTAAGA AAAATCTGAG ATACGCCCGA
  GTTCTTCCTG TCCTCTCTTC                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss145558976	ENSMUSSNP1129784	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	A/J
rs48996506					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:136508169 () rs orientation: forward

Symbol	Name	Function Class
4933409D19Rik	RIKEN cDNA 4933409D19 gene	within coordinates
Gm33994	predicted gene, 33994	within coordinates
Gm57131	predicted gene, 57131	within coordinates
Rr367011	regulatory region 367011	718 bp downstream
Rr419471	regulatory region 419471	1968 bp distal
Rr419472	regulatory region 419472	965 bp distal
Rr419473	regulatory region 419473	753 bp distal
Rr419474	regulatory region 419474	1496 bp proximal
Tssr9072	transcription start site region 9072	780 bp downstream
Tssr9073	transcription start site region 9073	758 bp downstream
Tssr13942	transcription start site region 13942	98 bp downstream
Tssr13943	transcription start site region 13943	123 bp downstream
Tssr13944	transcription start site region 13944	150 bp downstream